Yuan, F. (2017), A multi-element sediment record of hydrological and environmental changes from Lake Erie since 1800, Journal of Paleolimnology, ():1-20, doi:10.1007/s10933-017-9953-3

Yuan, F., R. Depew, and C. Soltis-Muth (2014), Ecosystem regime change inferred from the distribution of trace metals in Lake Erie sediments, Scientific Reports, 4(7265):1-7, doi:10.1038/srep07265.

Liu, Z., K. Yoshimura, G. Bowen, N. Buenning, C. Risi, J. Welker, and F. Yuan (2014), Paired oxygen isotope records reveal modern North American atmospheric dynamics during the Holocene, Nature Communications, 5(3701):1-7, doi:10.1038/ncomms4701.

Yuan, F., J. Quellos, and C. Fan (2013), Controls of phosphorus loading and transport in the Cuyahoga River of northeastern Ohio, USA, Applied Geochemistry, 38(11):55-65, doi:10.1016 /j.apgeochem.2013.08.011.

Yuan, F., M. Koran, and A. Valdez (2013), Late Glacial and Holocene record of climatic change in the southern Rocky Mountains from sediments in San Luis Lake, Colorado, USA , Palaeogeography, Palaeoclimatology, Palaeoecology, 392(12):146-160, doi:10.1016 /j.palaeo.2013.09.016.

Yuan, F. and B. Mayer (2012), Chemical and isotopic evaluation of sulfur sources and cycling in the Pecos River, New Mexico, USA, Chemical Geology, 291(1-2):13-22, doi:10.1016/j.chemgeo.2011.11.014.

Yuan, F., Y. Sheng, T. Yao, C. Fan, J. Li, H. Zhao, Y. Lei (2011), Evaporative enrichment of oxygen-18 and deuterium in lake waters on the Tibetan Plateau, Journal of Paleolimnology, 46(2): 291-307, doi:10.1007/s10933-011-9540-y.

Yuan, F., S. Miyamoto (2008), Characteristics of oxygen-18 and deuterium composition in waters of the Pecos River in American Southwest, Chemical Geology, 255(1-2):220-230, doi:10.1016/j.chemgeo.2008.06.045

Yuan, F., S. Anand, and S. Miyamoto (2007), Changes in major element hydrochemistry of the Pecos River in American Southwest since 1935, Applied Geochemistry, 22(8):1798-1813, doi:10.1016/j.apgeochem.2007.03.036.

Yuan, F., B. K. Linsley, S. P. Howe, S. P. Lund, and J. P. McGeehin (2006), Late Holocene lake-level fluctuations in Walker Lake, Nevada, USA, Palaeogeography, Palaeoclimatology, Palaeoecology, 240(3-4):497-507, doi:10.1016/j.palaeo.2006.03.003.

Yuan, F., B. K. Linsley, and S. P. Howe (2006), Evaluating sedimentary geochemical lake-level tracers in Walker Lake over the last 200 years, Journal of Paleolimnology, 36(1): 37-54, doi:10.1007/s10933-006-0004-8.

Inosako, K., F. Yuan, and S. Miyamoto (2006), Simple methods for estimating outflow salinity from inflow and reservoir storage, Agricultural Water Management, 82(3): 411-420, doi:10.1016/j.agwat.2005.07.030.

Yuan, F., and Z. Lu (2005), Analytical solutions for vertical water flow in unsaturated, rooted soils with variable surface fluxes, Vadose Zone Journal, 4(4): 1210-1218, doi:10.2136/vzj2005.0043.

Yuan, F., and S. Miyamoto (2005), Dominant processes controlling water chemistry of the Pecos River in American Southwest, Geophysical Research Letters, 32(17): 1-4, L17406, doi:10.1029/2005GL023359.

Yuan, F., and S. Miyamoto (2004), Influence of the Pacific Decadal Oscillation on hydrochemistry of the Rio Grande, USA and Mexico, Geochemistry Geophysics Geosystems, 5(12): 1-10, Q12010, doi: 10.1029/2004GC000769.

Yuan, F., B. K. Linsley, S. P. Lund, and J. P. McGeehin (2004), A 1200 year record of hydrologic variability in the Sierra Nevada from sediments in Walker Lake, Nevada, Geochemistry Geophysics Geosystems, 5(3): 1-13, Q03007, doi:10.1029/2003GC000652.